Databases for RNA-Seq Data Retrieval and Exploratory Data Analysis
in Transcriptomics > Transcriptomic Data Analysis
Created by
Dr. Gus Kousoulas
What you will learn?
Explore various publicly available RNA-Seq data repositories. Learn how to access, retrieve, and manage datasets from key databases such as NCBI SRA, GEO, and TCGA. This module also covers metadata extraction and best practices for handling large sequencing datasets.
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I. NCBI Resources for Data Extraction
4 Parts
II. TCGA
4 Parts
IV. Expression Atlas
2 Parts
V. What Next ? Overview of DGE Analysis
2 Parts
VI. Data Preprocessing and Normalization
3 Parts
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